If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ), 'gf_id' => 'HOM05D000740', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000740' ), 'data_identifier' => 'HOM05D000740', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000740', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '788', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15910' => 'bna', 'A01p29530' => 'bna', 'A02p30200' => 'bna', 'A03p55370' => 'bna', 'A06p07560' => 'bna', 'A06p45790' => 'bna', 'A07p17410' => 'bna', 'A08p04130' => 'bna', 'A08p21450' => 'bna', 'A09p19010' => 'bna', 'A09p22420' => 'bna', 'A09p64610' => 'bna', 'Aa31LG1G4110' => 'aar', 'Aa31LG2G11370' => 'aar', 'Aa31LG2G9790' => 'aar', 'Aa31LG4G9650' => 'aar', 'Aa31LG9G6260' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2762' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3625' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1431' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2653' => 'aag', 'Actinidia03380' => 'ach', 'Actinidia09216' => 'ach', 'Actinidia10379' => 'ach', 'Actinidia14813' => 'ach', 'Actinidia16881' => 'ach', 'Actinidia19349' => 'ach', 'Actinidia19635' => 'ach', 'Actinidia25957' => 'ach', 'Actinidia29622' => 'ach', 'Actinidia33094' => 'ach', 'Actinidia35507' => 'ach', 'Actinidia37416' => 'ach', 'Actinidia37417' => 'ach', 'Ah.02g130180' => 'amhyb', 'Ah.03g133170' => 'amhyb', 'Ah.04g158470' => 'amhyb', 'Ah.05g170800' => 'amhyb', 'Ah.07g200260' => 'amhyb', 'Ah.12g054930' => 'amhyb', 'AL1G21650' => 'aly', 'AL1G66480' => 'aly', 'AL2G15800' => 'aly', 'AL7G28660' => 'aly', 'AL8G11710' => 'aly', 'Aqoxy3G02400' => 'aox', 'Aqoxy5G02734' => 'aox', 'Aqoxy5G03811' => 'aox', 'Aqoxy6G01442' => 'aox', 'arahy.Tifrunner.gnm1.ann1.45UH84' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49C0TI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ANY8RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJ0SSX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DL05U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX1AWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I4VWAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IZX6KC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K7MVK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KS6FY7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTB7UZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD4H3Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZM6M9V' => 'arhy', 'AT1G10730' => 'ath', 'AT1G56590' => 'ath', 'AT1G60780' => 'ath', 'AT4G24550' => 'ath', 'AT5G46630' => 'ath', 'ATR0022G010' => 'atr', 'ATR0049G047' => 'atr', 'ATR0585G117' => 'atr', 'ATR0693G373' => 'atr', 'Atru.chr11.2120' => 'acertr', 'Atru.chr11.2136' => 'acertr', 'Atru.chr13.1027' => 'acertr', 'Atru.chr2.233' => 'acertr', 'Atru.chr6.122' => 'acertr', 'Atru.chr6.1736' => 'acertr', 'Atru.chr9.2547' => 'acertr', 'AUR62000428' => 'cqu', 'AUR62005443' => 'cqu', 'AUR62006774' => 'cqu', 'AUR62007278' => 'cqu', 'AUR62008168' => 'cqu', 'AUR62018726' => 'cqu', 'AUR62019039' => 'cqu', 'AUR62027876' => 'cqu', 'AUR62028745' => 'cqu', 'BcaB02g11115' => 'bca', 'BcaB04g20287' => 'bca', 'BcaB07g30829' => 'bca', 'BcaB07g31131' => 'bca', 'BcaB08g37370' => 'bca', 'BcaC03g16870' => 'bca', 'BcaC04g21695' => 'bca', 'BcaC04g22070' => 'bca', 'BcaC04g23197' => 'bca', 'BcaC05g24956' => 'bca', 'BcaC06g31461' => 'bca', 'BcaC06g31818' => 'bca', 'BcaC06g32876' => 'bca', 'BcaC06g34364' => 'bca', 'BcaC06g36657' => 'bca', 'BcaC07g41798' => 'bca', 'BcaC09g49371' => 'bca', 'BcaC09g50854' => 'bca', 'BolC1t01916H' => 'bol', 'BolC1t03703H' => 'bol', 'BolC2t10803H' => 'bol', 'BolC5t29656H' => 'bol', 'BolC6t37572H' => 'bol', 'BolC7t40579H' => 'bol', 'BolC7t43536H' => 'bol', 'BolC7t45858H' => 'bol', 'BolC8t48577H' => 'bol', 'BolC8t52398H' => 'bol', 'BolC9t54011H' => 'bol', 'BolC9t55306H' => 'bol', 'BolC9t55735H' => 'bol', 'BraA01t01525Z' => 'bra', 'BraA01t03087Z' => 'bra', 'BraA02t08036Z' => 'bra', 'BraA03t14596Z' => 'bra', 'BraA04t16188Z' => 'bra', 'BraA06t23958Z' => 'bra', 'BraA06t27448Z' => 'bra', 'BraA08t32438Z' => 'bra', 'BraA08t34094Z' => 'bra', 'BraA09t37519Z' => 'bra', 'BraA09t37846Z' => 'bra', 'BraA09t41829Z' => 'bra', 'BraA10t42494Z' => 'bra', 'C01p19880' => 'bna', 'C01p37360' => 'bna', 'C02p47670' => 'bna', 'C05p09110' => 'bna', 'C07p01750' => 'bna', 'C07p29890' => 'bna', 'C07p53650' => 'bna', 'C08p48590' => 'bna', 'C09p11210' => 'bna', 'C09p21280' => 'bna', 'C09p21290' => 'bna', 'C09p23830' => 'bna', 'C09p28750' => 'bna', 'CAN.G1076.43' => 'can', 'CAN.G1414.2' => 'can', 'CAN.G201.23' => 'can', 'CAN.G475.38' => 'can', 'CAN.G7.18' => 'can', 'CAN.G866.43' => 'can', 'CAN.G993.29' => 'can', 'CANSAT01G2761' => 'cansat', 'CANSAT21G0551' => 'cansat', 'CANSAT25G0785' => 'cansat', 'CANSAT54G1852' => 'cansat', 'CANSAT64G2392' => 'cansat', 'CANSAT80G1011' => 'cansat', 'CARHR010920' => 'chi', 'CARHR051770' => 'chi', 'CARHR054920' => 'chi', 'CARHR174880' => 'chi', 'CARHR231950' => 'chi', 'Carub.0001s1025' => 'cru', 'Carub.0002s0457' => 'cru', 'Carub.0002s0731' => 'cru', 'Carub.0007s1652' => 'cru', 'Carub.0008s0128' => 'cru', 'Ca_02082_v3' => 'car', 'Ca_04582_v3' => 'car', 'Ca_05427_v3' => 'car', 'Ca_09290_v3' => 'car', 'Ca_22575_v3' => 'car', 'Ca_24647_v3' => 'car', 'CBR_g37139' => 'cbr', 'CBR_g40361' => 'cbr', 'CBR_g50247' => 'cbr', 'Cc02_g35120' => 'ccan', 'Cc08_g02540' => 'ccan', 'Cc10_g15810' => 'ccan', 'Cc11_g15540' => 'ccan', 'CDE03G0315' => 'cde', 'CDE06G2549' => 'cde', 'CDE06G2623' => 'cde', 'CDE07G0874' => 'cde', 'CDE11G0775' => 'cde', 'CDE11G1122' => 'cde', 'CDE12G0393' => 'cde', 'Cfa006712' => 'cfa', 'Cfa009196' => 'cfa', 'Cfa012422' => 'cfa', 'Cfa013686' => 'cfa', 'Cfa013870' => 'cfa', 'Cfa023946' => 'cfa', 'Ciclev10001124m.g' => 'ccl', 'Ciclev10001309m.g' => 'ccl', 'Ciclev10023962m.g' => 'ccl', 'Ciclev10031568m.g' => 'ccl', 'Ciclev10031619m.g' => 'ccl', 'CiPaw.05G184000' => 'cil', 'CiPaw.06G068800' => 'cil', 'CiPaw.07G157500' => 'cil', 'CiPaw.07G166400' => 'cil', 'CiPaw.08G154100' => 'cil', 'CiPaw.11G092200' => 'cil', 'CiPaw.12G029500' => 'cil', 'CiPaw.12G062500' => 'cil', 'ClCG01G010860' => 'cla', 'ClCG05G018710' => 'cla', 'ClCG05G025630' => 'cla', 'ClCG09G012060' => 'cla', 'COL.COLO4_05522' => 'col', 'COL.COLO4_17060' => 'col', 'COL.COLO4_24244' => 'col', 'COL.COLO4_26250' => 'col', 'COL.COLO4_30150' => 'col', 'COL.COLO4_35219' => 'col', 'Cpa.g.sc172.13' => 'cpa', 'Cpa.g.sc21.5' => 'cpa', 'Cpa.g.sc35.63' => 'cpa', 'Cpa.g.sc48.192' => 'cpa', 'Cpa.g.sc69.96' => 'cpa', 'Cre02.g146600' => 'cre', 'Cre06.g262250' => 'cre', 'Cre16.g685277' => 'cre', 'CsaV3_1G015720' => 'csa', 'CsaV3_3G045470' => 'csa', 'CsaV3_3G049290' => 'csa', 'CsaV3_5G031270' => 'csa', 'CSS0000805' => 'camsi', 'CSS0008002' => 'camsi', 'CSS0010447' => 'camsi', 'CSS0014228' => 'camsi', 'CSS0015476' => 'camsi', 'CSS0016606' => 'camsi', 'CSS0017139' => 'camsi', 'CSS0020201' => 'camsi', 'CSS0022848' => 'camsi', 'CSS0022870' => 'camsi', 'CSS0023283' => 'camsi', 'CSS0027386' => 'camsi', 'CSS0028560' => 'camsi', 'CSS0030163' => 'camsi', 'CSS0030316' => 'camsi', 'CSS0031046' => 'camsi', 'CSS0033450' => 'camsi', 'CSS0043889' => 'camsi', 'CSS0044650' => 'camsi', 'DCAR_005624' => 'dca', 'DCAR_007062' => 'dca', 'DCAR_008277' => 'dca', 'DCAR_010138' => 'dca', 'DCAR_016035' => 'dca', 'DCAR_025292' => 'dca', 'DCAR_026528' => 'dca', 'DCAR_031137' => 'dca', 'Dinv15246' => 'din', 'Dinv15247' => 'din', 'Dinv24807' => 'din', 'Dinv25205' => 'din', 'Dinv28944' => 'din', 'Dinv30915' => 'din', 'Dinv38551' => 'din', 'Dinv42622' => 'din', 'Dinv44852' => 'din', 'Duzib041G0090' => 'dzi', 'Duzib068G0419' => 'dzi', 'Duzib084G0019' => 'dzi', 'Duzib093G0325' => 'dzi', 'Duzib093G0654' => 'dzi', 'Duzib116G0955' => 'dzi', 'Duzib177G0604' => 'dzi', 'Duzib205G1679' => 'dzi', 'Duzib248G0899' => 'dzi', 'Duzib268G1760' => 'dzi', 'ECA232G3440' => 'eca', 'ECA233G2545' => 'eca', 'ECA233G5810' => 'eca', 'ECA234G3215' => 'eca', 'ECA238G4378' => 'eca', 'ECA246G5118' => 'eca', 'ECA247G1469' => 'eca', 'ECA247G2563' => 'eca', 'EL10Ac1g01064' => 'bvu', 'EL10Ac4g09503' => 'bvu', 'EL10Ac5g10686' => 'bvu', 'EL10Ac5g11959' => 'bvu', 'EL10Ac5g12138' => 'bvu', 'EL10Ac6g13779' => 'bvu', 'EL10Ac6g14110' => 'bvu', 'Eucgr.B03301' => 'egr', 'Eucgr.E00287' => 'egr', 'Eucgr.F00417' => 'egr', 'Eucgr.H03310' => 'egr', 'FAN02G2424' => 'fan', 'FAN04G0763' => 'fan', 'FAN04G0919' => 'fan', 'FAN04G3189' => 'fan', 'FAN05G3311' => 'fan', 'FAN07G0546' => 'fan', 'FAN07G1090' => 'fan', 'FAN08G1458' => 'fan', 'FAN08G2401' => 'fan', 'FAN08G2435' => 'fan', 'FAN09G2445' => 'fan', 'FAN12G1195' => 'fan', 'FAN12G1520' => 'fan', 'FAN13G0314' => 'fan', 'FAN13G0725' => 'fan', 'FAN13G1661' => 'fan', 'FAN13G3285' => 'fan', 'FAN14G5152' => 'fan', 'FAN15G1916' => 'fan', 'FAN17G1047' => 'fan', 'FAN18G1881' => 'fan', 'FAN18G2984' => 'fan', 'FAN18G3997' => 'fan', 'FAN20G2246' => 'fan', 'FAN22G1973' => 'fan', 'FAN26G3328' => 'fan', 'FAN27G1372' => 'fan', 'FvH4_2g39370' => 'fve', 'FvH4_4g25870' => 'fve', 'FvH4_5g05940' => 'fve', 'FvH4_5g21870' => 'fve', 'FvH4_5g35480' => 'fve', 'FvH4_6g07890' => 'fve', 'Glyma.01G027300' => 'gma', 'Glyma.01G199000' => 'gma', 'Glyma.02G037700' => 'gma', 'Glyma.02G213600' => 'gma', 'Glyma.03G230200' => 'gma', 'Glyma.04G029800' => 'gma', 'Glyma.05G111900' => 'gma', 'Glyma.06G029800' => 'gma', 'Glyma.08G283400' => 'gma', 'Glyma.10G145500' => 'gma', 'Glyma.11G042800' => 'gma', 'Glyma.14G181300' => 'gma', 'Glyma.17G155100' => 'gma', 'Glyma.18G143100' => 'gma', 'Glyma.19G227500' => 'gma', 'Gohir.A03G001700' => 'ghi', 'Gohir.A03G136700' => 'ghi', 'Gohir.A05G220200' => 'ghi', 'Gohir.A06G032608' => 'ghi', 'Gohir.A11G030200' => 'ghi', 'Gohir.A12G144500' => 'ghi', 'Gohir.A12G208950' => 'ghi', 'Gohir.A13G176600' => 'ghi', 'Gohir.D02G159900' => 'ghi', 'Gohir.D03G170600' => 'ghi', 'Gohir.D05G222800' => 'ghi', 'Gohir.D06G031900' => 'ghi', 'Gohir.D11G028800' => 'ghi', 'Gohir.D12G149100' => 'ghi', 'Gohir.D12G211650' => 'ghi', 'Gohir.D13G183100' => 'ghi', 'Gorai.003G181000' => 'gra', 'Gorai.005G180000' => 'gra', 'Gorai.007G031400' => 'gra', 'Gorai.008G160500' => 'gra', 'Gorai.008G227200' => 'gra', 'Gorai.009G230200' => 'gra', 'Gorai.010G035200' => 'gra', 'Gorai.013G208400' => 'gra', 'GSVIVG01004093001' => 'vvi', 'GSVIVG01009765001' => 'vvi', 'GSVIVG01013199001' => 'vvi', 'GSVIVG01014898001' => 'vvi', 'GSVIVG01014924001' => 'vvi', 'GSVIVG01014925001' => 'vvi', 'GSVIVG01015630001' => 'vvi', 'GSVIVG01031270001' => 'vvi', 'HanXRQChr02g0035701' => 'han', 'HanXRQChr06g0167401' => 'han', 'HanXRQChr07g0197641' => 'han', 'HanXRQChr12g0372051' => 'han', 'HanXRQChr13g0401151' => 'han', 'HanXRQChr14g0431141' => 'han', 'HanXRQChr17g0535911' => 'han', 'Haze_04049' => 'cav', 'Haze_07559' => 'cav', 'Haze_08254' => 'cav', 'Haze_12233' => 'cav', 'Haze_22328' => 'cav', 'Haze_22547' => 'cav', 'Haze_27109' => 'cav', 'Haze_27205' => 'cav', 'Hma1.2p1_0008F-1.1_g005380' => 'hma', 'Hma1.2p1_0008F-1.1_g005390' => 'hma', 'Hma1.2p1_0125F.1_g058960' => 'hma', 'Hma1.2p1_0160F.1_g071220' => 'hma', 'Hma1.2p1_0223F.1_g094150' => 'hma', 'Hma1.2p1_0585F.1_g183660' => 'hma', 'Hma1.2p1_0991F.1_g245050' => 'hma', 'HPP92_013343' => 'vpl', 'HPP92_013348' => 'vpl', 'HPP92_020527' => 'vpl', 'HPP92_020528' => 'vpl', 'HPP92_024515' => 'vpl', 'HPP92_024585' => 'vpl', 'HPP92_028002' => 'vpl', 'HPP92_028086' => 'vpl', 'Hund02773' => 'sun', 'Hund06015' => 'sun', 'Hund07301' => 'sun', 'Hund09459' => 'sun', 'Hund11248' => 'sun', 'Hund16861' => 'sun', 'Hund19232' => 'sun', 'Hund21859' => 'sun', 'Hund25382' => 'sun', 'Hund27015' => 'sun', 'Lalb_Chr04g0252881' => 'lal', 'Lalb_Chr04g0260361' => 'lal', 'Lalb_Chr05g0216631' => 'lal', 'Lalb_Chr05g0220531' => 'lal', 'Lalb_Chr09g0326191' => 'lal', 'Lalb_Chr09g0329451' => 'lal', 'Lalb_Chr11g0062221' => 'lal', 'Lalb_Chr16g0382031' => 'lal', 'Lalb_Chr16g0386001' => 'lal', 'Lalb_Chr17g0344491' => 'lal', 'Lj1g0009159' => 'lja', 'Lj1g0014876' => 'lja', 'Lj2A242T76' => 'lonja', 'Lj2g0001606' => 'lja', 'Lj2g0006132' => 'lja', 'Lj3C1057G15' => 'lonja', 'Lj4g0003507' => 'lja', 'Lj5A128T66' => 'lonja', 'Lj6A811G78' => 'lonja', 'Lj8A293G17' => 'lonja', 'Lj9A444T107' => 'lonja', 'LjContig00408g0002388' => 'lja', 'Lju99C11G6' => 'lonja', 'Lsat_1_v5_gn_1_28060' => 'lsa', 'Lsat_1_v5_gn_2_11981' => 'lsa', 'Lsat_1_v5_gn_3_16840' => 'lsa', 'Lsat_1_v5_gn_3_1900' => 'lsa', 'Lsat_1_v5_gn_3_62221' => 'lsa', 'Lsat_1_v5_gn_4_4520' => 'lsa', 'Lsat_1_v5_gn_5_120681' => 'lsa', 'Lsat_1_v5_gn_6_25621' => 'lsa', 'Lsat_1_v5_gn_6_66241' => 'lsa', 'Lsat_1_v5_gn_8_150641' => 'lsa', 'Lsat_1_v5_gn_9_99381' => 'lsa', 'Manes.02G145500' => 'mes', 'Manes.09G178800' => 'mes', 'Manes.12G024500' => 'mes', 'Manes.13G026100' => 'mes', 'Manes.14G062200' => 'mes', 'Manes.15G168600' => 'mes', 'Manes.18G020800' => 'mes', 'Manes.18G059600' => 'mes', 'Mapoly0002s0178' => 'mpo', 'Mapoly0013s0056' => 'mpo', 'Mapoly0033s0064' => 'mpo', 'Mapoly0047s0046' => 'mpo', 'MBI02_g32609_MAGBIO' => 'mbi', 'MBI04_g22940_MAGBIO' => 'mbi', 'MBI04_g22941_MAGBIO' => 'mbi', 'MBI06_g07368_MAGBIO' => 'mbi', 'MBI06_g44918_MAGBIO' => 'mbi', 'MBI10_g00731_MAGBIO' => 'mbi', 'MBI14_g32134_MAGBIO' => 'mbi', 'MBI15_g35113_MAGBIO' => 'mbi', 'MBI16_g23851_MAGBIO' => 'mbi', 'MBI16_g44197_MAGBIO' => 'mbi', 'MBI19_g32687_MAGBIO' => 'mbi', 'MBI19_g38786_MAGBIO' => 'mbi', 'MBI19_g47550_MAGBIO' => 'mbi', 'MCO05G733' => 'mco', 'MCO08G247' => 'mco', 'MCO09G094' => 'mco', 'MCO16G522' => 'mco', 'MD04G1191100' => 'mdo', 'MD06G1032900' => 'mdo', 'MD06G1169300' => 'mdo', 'MD07G1095400' => 'mdo', 'MD08G1026000' => 'mdo', 'MD08G1196400' => 'mdo', 'MD12G1203700' => 'mdo', 'MD13G1097400' => 'mdo', 'MD14G1174600' => 'mdo', 'MD15G1022700' => 'mdo', 'MD15G1384200' => 'mdo', 'MD16G1098500' => 'mdo', 'MD16G1276300' => 'mdo', 'Medtr3g112190' => 'mtr', 'Medtr3g452810' => 'mtr', 'Medtr4g022790' => 'mtr', 'Medtr5g014330' => 'mtr', 'Medtr5g033500' => 'mtr', 'Medtr5g066050' => 'mtr', 'Medtr7g111870' => 'mtr', 'Medtr8g069565' => 'mtr', 'MELO3C003397.2' => 'cme', 'MELO3C003795.2' => 'cme', 'MELO3C011967.2' => 'cme', 'MELO3C026110.2' => 'cme', 'Migut.B00926' => 'egut', 'Migut.E00191' => 'egut', 'Migut.E00923' => 'egut', 'Migut.L01479' => 'egut', 'Migut.N02867' => 'egut', 'Migut.N02868' => 'egut', 'MSTRG.13759' => 'ama', 'MSTRG.1981' => 'ama', 'MSTRG.20369' => 'ama', 'MSTRG.22173' => 'ama', 'MSTRG.574' => 'ama', 'MSTRG.7918' => 'ama', 'Nitab4.5_0000003g0770' => 'nta', 'Nitab4.5_0000131g0340' => 'nta', 'Nitab4.5_0000256g0450' => 'nta', 'Nitab4.5_0000370g0020' => 'nta', 'Nitab4.5_0000804g0100' => 'nta', 'Nitab4.5_0002255g0090' => 'nta', 'Nitab4.5_0002255g0110' => 'nta', 'Nitab4.5_0002358g0020' => 'nta', 'Nitab4.5_0002552g0040' => 'nta', 'Nitab4.5_0003044g0060' => 'nta', 'Nitab4.5_0003709g0070' => 'nta', 'Nitab4.5_0003838g0110' => 'nta', 'Nitab4.5_0004865g0030' => 'nta', 'Nitab4.5_0006332g0020' => 'nta', 'Nitab4.5_0006991g0070' => 'nta', 'Nitab4.5_0008336g0040' => 'nta', 'Nitab4.5_0008650g0020' => 'nta', 'Nn1g00543' => 'nnu', 'Nn1g05531' => 'nnu', 'Nn1g05545' => 'nnu', 'Nn3g16756' => 'nnu', 'Nn3g21828' => 'nnu', 'Nn4g22649' => 'nnu', 'Nn5g29902' => 'nnu', 'Nn6g33611' => 'nnu', 'Oeu001719.2' => 'oeu', 'Oeu006984.1' => 'oeu', 'Oeu017799.1' => 'oeu', 'Oeu023593.1' => 'oeu', 'Oeu024828.1' => 'oeu', 'Oeu038623.1' => 'oeu', 'Oeu059917.1' => 'oeu', 'Oeu061177.1' => 'oeu', 'Os01g0703600' => 'osa', 'Os02g0690700' => 'osa', 'Os05g0383100' => 'osa', 'Os05g0543100' => 'osa', 'Os07g0620300' => 'osa', 'Peaxi162Scf00102g00529' => 'pax', 'Peaxi162Scf00128g00025' => 'pax', 'Peaxi162Scf00357g00721' => 'pax', 'Peaxi162Scf00615g00516' => 'pax', 'Peaxi162Scf00689g00018' => 'pax', 'Peaxi162Scf00979g00028' => 'pax', 'PGR031G2530' => 'pgr', 'PGR031G2994' => 'pgr', 'PGR042G0297' => 'pgr', 'PGR083G0115' => 'pgr', 'PGR083G2080' => 'pgr', 'PGR102G1494' => 'pgr', 'PGSC0003DMG400001136' => 'stu', 'PGSC0003DMG400002755' => 'stu', 'PGSC0003DMG400009348' => 'stu', 'PGSC0003DMG400020502' => 'stu', 'PGSC0003DMG400026991' => 'stu', 'Phvul.001G224000' => 'pvu', 'Phvul.002G059300' => 'pvu', 'Phvul.003G063300' => 'pvu', 'Phvul.003G230400' => 'pvu', 'Phvul.007G203200' => 'pvu', 'Phvul.008G181200' => 'pvu', 'Phvul.009G061100' => 'pvu', 'Potri.001G143800' => 'ptr', 'Potri.002G105050' => 'ptr', 'Potri.002G105100' => 'ptr', 'Potri.003G090800' => 'ptr', 'Potri.005G010600' => 'ptr', 'Potri.008G187600' => 'ptr', 'Potri.010G044700' => 'ptr', 'Potri.013G006400' => 'ptr', 'Pp3c16_16940' => 'ppa', 'Pp3c18_18090' => 'ppa', 'Pp3c19_4330' => 'ppa', 'Pp3c27_2250' => 'ppa', 'Pp3c7_1420' => 'ppa', 'Pp3c9_1790' => 'ppa', 'PRCOL_00002742' => 'pco', 'PRCOL_00003531' => 'pco', 'PRCOL_00005868' => 'pco', 'PRCOL_00005938' => 'pco', 'PRCOL_00006540' => 'pco', 'Prupe.1G248000' => 'ppe', 'Prupe.1G374700' => 'ppe', 'Prupe.1G530400' => 'ppe', 'Prupe.4G247900' => 'ppe', 'Prupe.5G038900' => 'ppe', 'Prupe.5G168100' => 'ppe', 'Prupe.6G309600' => 'ppe', 'Psat2g066120' => 'psa', 'Psat2g093960' => 'psa', 'Psat2g110000' => 'psa', 'Psat2g173400' => 'psa', 'Psat3g014280' => 'psa', 'Psat3g049320' => 'psa', 'Psat4g045840' => 'psa', 'Psat4g045920' => 'psa', 'Psat4g115080' => 'psa', 'Psat5g015720' => 'psa', 'Psat5g198680' => 'psa', 'Psat6g122760' => 'psa', 'PSO017G3822' => 'pso', 'PSO063G1553' => 'pso', 'PSO063G4273' => 'pso', 'PSO478G1661' => 'pso', 'PSO541G2502' => 'pso', 'PSO675G7895' => 'pso', 'PSO724G0873' => 'pso', 'PSO729G0028' => 'pso', 'PSO782G0376' => 'pso', 'PSO832G3394' => 'pso', 'QL02p009537' => 'qlo', 'QL03p017096' => 'qlo', 'QL03p017380' => 'qlo', 'QL03p058587' => 'qlo', 'QL09p017597' => 'qlo', 'QL10p008057' => 'qlo', 'QL12p005969' => 'qlo', 'RcHm_v2.0_Chr3g0457601' => 'rch', 'RcHm_v2.0_Chr4g0433301' => 'rch', 'RcHm_v2.0_Chr6g0301631' => 'rch', 'RcHm_v2.0_Chr7g0192901' => 'rch', 'RcHm_v2.0_Chr7g0209421' => 'rch', 'RcHm_v2.0_Chr7g0236861' => 'rch', 'Rhsim01G0087000' => 'rsi', 'Rhsim05G0219100' => 'rsi', 'Rhsim06G0072400' => 'rsi', 'Rhsim07G0126200' => 'rsi', 'Rhsim08G0175800' => 'rsi', 'Rhsim11G0098500' => 'rsi', 'Rhsim12G0041400' => 'rsi', 'RhsimUnG0049400' => 'rsi', 'RhsimUnG0225300' => 'rsi', 'Sabra01G0112100' => 'sbr', 'Sabra01G0112200' => 'sbr', 'Sabra02G0082500' => 'sbr', 'Sabra03G0060400' => 'sbr', 'Sabra05G0007700' => 'sbr', 'Sabra05G0018900' => 'sbr', 'Sabra08G0142000' => 'sbr', 'Sabra10G0023300' => 'sbr', 'Sabra13G0005400' => 'sbr', 'SalBow3G1949' => 'sbo', 'SalBow5G0556' => 'sbo', 'SalBow5G2516' => 'sbo', 'SalBow8G4110' => 'sbo', 'Sc01g0007520' => 'sci', 'Sc04g0001630' => 'sci', 'Sc04g0009410' => 'sci', 'Sc16g0009210' => 'sci', 'Sc16g0009220' => 'sci', 'Sc22g0001450' => 'sci', 'Sc26g0000260' => 'sci', 'Sed0001068' => 'sed', 'Sed0002963' => 'sed', 'Sed0006393' => 'sed', 'Sed0013602' => 'sed', 'Sed0014447' => 'sed', 'Sed0016251' => 'sed', 'Sed0016353' => 'sed', 'SEGI_09165' => 'sgi', 'SEGI_11652' => 'sgi', 'SEGI_20015' => 'sgi', 'SEGI_27663' => 'sgi', 'SEGI_28990' => 'sgi', 'SGA_v2.0_scaffold20G09223' => 'sas', 'SGA_v2.0_scaffold4G01980' => 'sas', 'SGA_v2.0_scaffold63G21723' => 'sas', 'SGA_v2.0_scaffold6G03188' => 'sas', 'SGA_v2.0_scaffold84G26470' => 'sas', 'SGA_v2.0_scaffold87G26960' => 'sas', 'SGA_v2.0_scaffold87G26966' => 'sas', 'SGA_v2.0_scaffold87G27087' => 'sas', 'SHI07394' => 'shi', 'SHI17173' => 'shi', 'SHI18043' => 'shi', 'SHI20325' => 'shi', 'SMO118G0301' => 'smo', 'SMO146G0287' => 'smo', 'SMO165G0130' => 'smo', 'SMO361G0298' => 'smo', 'Solyc01g100820.3' => 'sly', 'Solyc04g026360.3' => 'sly', 'Solyc04g026380.4' => 'sly', 'Solyc04g076230.3' => 'sly', 'Solyc05g013340.3' => 'sly', 'Solyc06g061150.3' => 'sly', 'Solyc06g071650.3' => 'sly', 'Solyc08g006960.3' => 'sly', 'Solyc12g062520.1' => 'sly', 'Sopen00g006470' => 'spe', 'Sopen00g008400' => 'spe', 'Sopen01g044320' => 'spe', 'Sopen04g015680' => 'spe', 'Sopen05g008130' => 'spe', 'Sopen06g021350' => 'spe', 'Sopen06g027960' => 'spe', 'Sopen08g002930' => 'spe', 'Sp1g09430' => 'spa', 'Sp2g03970' => 'spa', 'Sp2g06150' => 'spa', 'Sp2g11460' => 'spa', 'Sp7g22550' => 'spa', 'TAR362G0721' => 'tar', 'TAR374G0932' => 'tar', 'TAR381G0776' => 'tar', 'TAR622G1361' => 'tar', 'TAR625G1089' => 'tar', 'TAR629G0901' => 'tar', 'TAR629G1405' => 'tar', 'TAR629G1794' => 'tar', 'TAR636G2315' => 'tar', 'THA.LOC104801702' => 'tha', 'THA.LOC104809583' => 'tha', 'THA.LOC104819369' => 'tha', 'THA.LOC104820554' => 'tha', 'THA.LOC104823652' => 'tha', 'THA.LOC104827749' => 'tha', 'Thecc.02G257000' => 'tca', 'Thecc.03G022600' => 'tca', 'Thecc.03G229600' => 'tca', 'Thecc.05G325900' => 'tca', 'Thecc.08G032700' => 'tca', 'Thecc.08G069700' => 'tca', 'Thhalv10000887m.g' => 'esa', 'Thhalv10007700m.g' => 'esa', 'Thhalv10023468m.g' => 'esa', 'Thhalv10023492m.g' => 'esa', 'Thhalv10025186m.g' => 'esa', 'TPR.G12434' => 'tpr', 'TPR.G16030' => 'tpr', 'TPR.G1623' => 'tpr', 'TPR.G34659' => 'tpr', 'TPR.G34893' => 'tpr', 'TPR.G38741' => 'tpr', 'TPR.G7843' => 'tpr', 'TWI36G0770' => 'twi', 'TWI56G0545' => 'twi', 'TWI56G0596' => 'twi', 'TWI56G1172' => 'twi', 'TWI60G1424' => 'twi', 'TWI75G0250' => 'twi', 'TWI81G0221' => 'twi', 'unitig_26.g10356' => 'ugi', 'unitig_52.g17213' => 'ugi', 'unitig_699.g19777' => 'ugi', 'unitig_736.g22773' => 'ugi', 'unitig_744.g24107' => 'ugi', 'vmacro01131' => 'vma', 'vmacro01134' => 'vma', 'vmacro01135' => 'vma', 'vmacro01586' => 'vma', 'vmacro14166' => 'vma', 'vmacro19319' => 'vma', 'vmacro21332' => 'vma', 'VMungo0251G0261' => 'vmu', 'VMungo0251G3208' => 'vmu', 'VMungo0647G2142' => 'vmu', 'VMungo0720G0696' => 'vmu', 'VMungo1215G0879' => 'vmu', 'VMungo1215G2797' => 'vmu', 'VMungo1309G2139' => 'vmu', 'VMungo1383G2765' => 'vmu', 'Zm00001eb041440' => 'zma', 'Zm00001eb070670' => 'zma', 'Zm00001eb076390' => 'zma', 'Zm00001eb105100' => 'zma', 'Zm00001eb155580' => 'zma', 'Zm00001eb160140' => 'zma', 'Zm00001eb170640' => 'zma', 'Zm00001eb209260' => 'zma', 'Zm00001eb251180' => 'zma', 'Zm00001eb257560' => 'zma', 'Zm00001eb270600' => 'zma', 'Zm00001eb297660' => 'zma', 'Zm00001eb361080' => 'zma' ) $gf_id = 'HOM05D000740' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000740' ) $data_identifier = 'HOM05D000740' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 9, 'bca' => (int) 18, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 6, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 19, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 4, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 8, 'han' => (int) 7, 'cav' => (int) 8, 'hma' => (int) 7, 'vpl' => (int) 8, 'sun' => (int) 10, 'lal' => (int) 10, 'lja' => (int) 6, 'lonja' => (int) 7, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 4, 'mbi' => (int) 13, 'mco' => (int) 4, 'mdo' => (int) 13, 'mtr' => (int) 8, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 6, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 6, 'pco' => (int) 5, 'ppe' => (int) 7, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 9, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 4, 'smo' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 9, 'tha' => (int) 6, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361080' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1